Welcome to cagraph’s documentation!
cagraph is a Python library for generating graphs from calcium imaging data of neural activity.
Check out the Usage section for further information, including how to Installation the project.
Note
This project is under active development.
Contents
- Usage
- cagraph
- Installation
- preprocessing
- cagraph
CaGraph
CaGraph.GraphTheory
CaGraph.GraphTheory.compare_graphs()
CaGraph.GraphTheory.get_betweenness_centrality()
CaGraph.GraphTheory.get_clustering_coefficient()
CaGraph.GraphTheory.get_communities()
CaGraph.GraphTheory.get_connected_components()
CaGraph.GraphTheory.get_correlated_pair_ratio()
CaGraph.GraphTheory.get_degree()
CaGraph.GraphTheory.get_density()
CaGraph.GraphTheory.get_eigenvector_centrality()
CaGraph.GraphTheory.get_hubs()
CaGraph.GraphTheory.get_largest_connected_component()
CaGraph.GraphTheory.get_path_length()
CaGraph.GraphTheory.get_smallworld_largest_subnetwork()
CaGraph.GraphTheory.graph
CaGraph.GraphTheory.neuron_dynamics
CaGraph.GraphTheory.node_labels
CaGraph.GraphTheory.num_neurons
CaGraph.GraphTheory.pearsons_correlation_matrix
CaGraph.GraphTheory.time
CaGraph.Plotting
CaGraph.Plotting.get_single_neuron_timecourse()
CaGraph.Plotting.graph
CaGraph.Plotting.neuron_dynamics
CaGraph.Plotting.num_neurons
CaGraph.Plotting.pearsons_correlation_matrix
CaGraph.Plotting.plot_all_neurons_timecourse()
CaGraph.Plotting.plot_correlation_heatmap()
CaGraph.Plotting.plot_multi_neuron_timecourse()
CaGraph.Plotting.plot_single_neuron_timecourse()
CaGraph.Plotting.time
CaGraph.betweenness_centrality
CaGraph.clustering_coefficient
CaGraph.communities
CaGraph.correlated_pair_ratio
CaGraph.data
CaGraph.dataset_id
CaGraph.degree
CaGraph.draw_graph()
CaGraph.dt
CaGraph.get_adjacency_matrix()
CaGraph.get_erdos_renyi_graph()
CaGraph.get_graph()
CaGraph.get_laplacian_matrix()
CaGraph.get_pearsons_correlation_matrix()
CaGraph.get_random_graph()
CaGraph.get_report()
CaGraph.get_weight_matrix()
CaGraph.graph
CaGraph.hubs
CaGraph.load()
CaGraph.neuron_dynamics
CaGraph.node_labels
CaGraph.num_neurons
CaGraph.pearsons_correlation_matrix
CaGraph.reset()
CaGraph.save()
CaGraph.sensitivity_analysis()
CaGraph.threshold
CaGraph.time
CaGraphBatch
CaGraphBatchTimeSamples
CaGraphBatchTimeSamples.dataset_identifiers
CaGraphBatchTimeSamples.get_cagraph()
CaGraphBatchTimeSamples.get_full_report()
CaGraphBatchTimeSamples.group_id
CaGraphBatchTimeSamples.load()
CaGraphBatchTimeSamples.save()
CaGraphBatchTimeSamples.save_individual_dataset_reports()
CaGraphBatchTimeSamples.threshold
CaGraphBehavior
CaGraphMatched
CaGraphTimeSamples
CaGraphTimeSamples.condition_identifiers
CaGraphTimeSamples.data
CaGraphTimeSamples.data_id
CaGraphTimeSamples.dt
CaGraphTimeSamples.get_cagraph()
CaGraphTimeSamples.get_full_report()
CaGraphTimeSamples.load()
CaGraphTimeSamples.node_labels
CaGraphTimeSamples.num_neurons
CaGraphTimeSamples.save()
CaGraphTimeSamples.threshold
- visualization
- Authors
- License