Index

B

behavior_identifiers (cagraph.CaGraphBehavior property)

betweenness_centrality (cagraph.CaGraph property)

C

cagraph module CaGraph (class in cagraph) CaGraph() (in module cagraph) CaGraph.GraphTheory (class in cagraph) CaGraph.Plotting (class in cagraph) CaGraphBatch (class in cagraph) CaGraphBatchTimeSamples (class in cagraph)

CaGraphBehavior (class in cagraph) CaGraphMatched (class in cagraph) CaGraphTimeSamples (class in cagraph) clustering_coefficient (cagraph.CaGraph property) communities (cagraph.CaGraph property) compare_graphs() (cagraph.CaGraph.GraphTheory method) condition_identifiers (cagraph.CaGraphTimeSamples property) correlated_pair_ratio (cagraph.CaGraph property)

D

data (cagraph.CaGraph property) (cagraph.CaGraphBehavior property) (cagraph.CaGraphTimeSamples property) data_id (cagraph.CaGraphBehavior property) (cagraph.CaGraphMatched property) (cagraph.CaGraphTimeSamples property) dataset_id (cagraph.CaGraph property) dataset_identifiers (cagraph.CaGraphBatch property) (cagraph.CaGraphBatchTimeSamples property) (cagraph.CaGraphMatched property)

degree (cagraph.CaGraph property) draw_graph() (cagraph.CaGraph method) dt (cagraph.CaGraph property) (cagraph.CaGraphBehavior property) (cagraph.CaGraphMatched property) (cagraph.CaGraphTimeSamples property)

G

get_adjacency_matrix() (cagraph.CaGraph method) get_betweenness_centrality() (cagraph.CaGraph.GraphTheory method) get_cagraph() (cagraph.CaGraphBatch method) (cagraph.CaGraphBatchTimeSamples method) (cagraph.CaGraphBehavior method) (cagraph.CaGraphMatched method) (cagraph.CaGraphTimeSamples method) get_clustering_coefficient() (cagraph.CaGraph.GraphTheory method) get_communities() (cagraph.CaGraph.GraphTheory method) get_connected_components() (cagraph.CaGraph.GraphTheory method) get_correlated_pair_ratio() (cagraph.CaGraph.GraphTheory method) get_degree() (cagraph.CaGraph.GraphTheory method) get_density() (cagraph.CaGraph.GraphTheory method) get_eigenvector_centrality() (cagraph.CaGraph.GraphTheory method) get_erdos_renyi_graph() (cagraph.CaGraph method) get_full_report() (cagraph.CaGraphBatch method) (cagraph.CaGraphBatchTimeSamples method) (cagraph.CaGraphBehavior method) (cagraph.CaGraphMatched method) (cagraph.CaGraphTimeSamples method)

get_graph() (cagraph.CaGraph method) get_hubs() (cagraph.CaGraph.GraphTheory method) get_laplacian_matrix() (cagraph.CaGraph method) get_largest_connected_component() (cagraph.CaGraph.GraphTheory method) get_path_length() (cagraph.CaGraph.GraphTheory method) get_pearsons_correlation_matrix() (cagraph.CaGraph method) get_random_graph() (cagraph.CaGraph method) get_report() (cagraph.CaGraph method) get_single_neuron_timecourse() (cagraph.CaGraph.Plotting method) get_smallworld_largest_subnetwork() (cagraph.CaGraph.GraphTheory method) get_weight_matrix() (cagraph.CaGraph method) graph (cagraph.CaGraph property) (cagraph.CaGraph.GraphTheory property) (cagraph.CaGraph.Plotting property) group_id (cagraph.CaGraphBatch property) (cagraph.CaGraphBatchTimeSamples property)

H

hubs (cagraph.CaGraph property)

L

load() (cagraph.CaGraph static method) (cagraph.CaGraphBatch static method) (cagraph.CaGraphBatchTimeSamples static method) (cagraph.CaGraphBehavior static method) (cagraph.CaGraphMatched static method) (cagraph.CaGraphTimeSamples static method)

M

module cagraph

N

neuron_dynamics (cagraph.CaGraph property) (cagraph.CaGraph.GraphTheory property) (cagraph.CaGraph.Plotting property) node_labels (cagraph.CaGraph property) (cagraph.CaGraph.GraphTheory property) (cagraph.CaGraphBehavior property) (cagraph.CaGraphMatched property) (cagraph.CaGraphTimeSamples property)

num_neurons (cagraph.CaGraph property) (cagraph.CaGraph.GraphTheory property) (cagraph.CaGraph.Plotting property) (cagraph.CaGraphBehavior property) (cagraph.CaGraphMatched property) (cagraph.CaGraphTimeSamples property)

P

pearsons_correlation_matrix (cagraph.CaGraph property) (cagraph.CaGraph.GraphTheory property) (cagraph.CaGraph.Plotting property)

plot_all_neurons_timecourse() (cagraph.CaGraph.Plotting method) plot_correlation_heatmap() (cagraph.CaGraph.Plotting method) plot_multi_neuron_timecourse() (cagraph.CaGraph.Plotting method) plot_single_neuron_timecourse() (cagraph.CaGraph.Plotting method)

R

reset() (cagraph.CaGraph method)

S

save() (cagraph.CaGraph method) (cagraph.CaGraphBatch method) (cagraph.CaGraphBatchTimeSamples method) (cagraph.CaGraphBehavior method) (cagraph.CaGraphMatched method) (cagraph.CaGraphTimeSamples method)

save_individual_dataset_reports() (cagraph.CaGraphBatch method) (cagraph.CaGraphBatchTimeSamples method) sensitivity_analysis() (cagraph.CaGraph method)

T

threshold (cagraph.CaGraph property) (cagraph.CaGraphBatch property) (cagraph.CaGraphBatchTimeSamples property) (cagraph.CaGraphBehavior property) (cagraph.CaGraphMatched property) (cagraph.CaGraphTimeSamples property)

time (cagraph.CaGraph property) (cagraph.CaGraph.GraphTheory property) (cagraph.CaGraph.Plotting property)